WebJul 29, 2024 · a, Average structure of the spike protein, showing the RBD of the subunit that the analysis focuses on (dashed box). b , Density map of the target RBD overlaid with the molecular model (PDB 6zwv ). WebProvide the --yshort option if the shortest dimension of your tomogram (the "ice thickness") is along the y axis (for example, 4096 x 500 x 4096). e2spt_boxer consists of _3 GUI …
How big should my particle box be? – The Jiang Lab - Purdue …
WebPlease note that the box-sizes suggested in EMAN2 are larger than those in EMAN1 for improved CTF correction. Details on box size selection are here . The refinement … WebApr 12, 2024 · 730×335 63.9 KB. This is for the large box with poorer resolution: 725×330 62.1 KB. The scale bar goes higher for the small box refinement. Given that the protein is so flexible due to hinging and also motion of the large amount of glycans, any additional solvent noise is probably detrimental to the alignment. pip took the dog in and tied it up
calculation of CCC between two maps - Google Groups
Web7th Jun, 2024. Michael J V White. Sparx. If you're looking to analyze multiple images, I recommend CellProfiler. It's a program that allows you to build a pipeline (essentially a similar to a ... WebLaunch e2boxer from e2projectmanager.py, choose Neural Net in Autoboxing Methods panel. Click Good Refs in Mouse Mode panel, choose a few good particles (~10 is usually enough, having more may help). … pip tomson legs